Downloads the required UMI4Cats example datasets.

downloadUMI4CexampleData(
  output_dir = "./",
  file_dir = "http://gattaca.imppc.org/genome_browser/lplab/UMI4Cats_data.tar.gz",
  use_sample = FALSE
)

Arguments

output_dir

Output directory for the datasets.

file_dir

Path to the compressed IRB database file.

use_sample

Boolean value for use a smaller sample of the examples.

Value

It creates the output_dir with the example UMI-4C files used by the vignette.

Examples

path <- downloadUMI4CexampleData()
#> Will begin downloading datasets to /var/folders/6s/7ydjk_816j12lnyvsx292_qr0000gn/T//RtmpyYrfv3/file10d8804be17
#> untar: using cmd = ‘/usr/bin/tar -xf '/var/folders/6s/7ydjk_816j12lnyvsx292_qr0000gn/T//RtmpyYrfv3/file10d8804be17' -C './'’
#> Done writing UMI4C example files to ./